miRBase entry: nta-MIR319a

Stem-loop nta-MIR319a


Accession
MI0021389
Description
Nicotiana tabacum nta-MIR319a precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
6 open access papers mention nta-MIR319a
(8 sentences)

Sequence

aguuaugaagagagcuuucuucgguccacacauaggaggugauaagguucaauuugcugccgacucauucauccaaaugcugagguuagauagucgaaagcaccucaguagcugaaugaaugaagcgggaguacaaguugagucuuaaguuuccugugcUUGGACUGAAGGGAGCUCCCUcuuacaauc
.....(((((((((((((((((((((((..((((((((((..((((((((((((((((.(((..((((((((.((..(((((((((...............)))))))))..)).))))))))..))).))..)))))))))))))).))))))))))..)))))))))))))))))..)))).))...

Structure
aguua  -    --                 ca          ga              --  g   ac        c  aa         uagaua 
     ug aaga  gagcuuucuucggucca  cauaggaggu  uaagguucaauuug  cu ccg  ucauucau ca  ugcugaggu      g
     || ||||  |||||||||||||||||  ||||||||||  ||||||||||||||  || |||  |||||||| ||  |||||||||      u
     ac uucU  CUCGAGGGAAGUCAGGU  guguccuuug  auucugaguugaac  ga ggc  aguaagua gu  augacucca      c
--cua  a    CC                 Uc          -a              au  g   ga        a  cg         cgaaag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR319a

Accession MIMAT0024699
Description Nicotiana tabacum nta-miR319a mature miRNA
Sequence 160 - UUGGACUGAAGGGAGCUCCCU - 180
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28