miRBase entry: nta-MIR399d

Stem-loop nta-MIR399d


Accession
MI0021406
Description
Nicotiana tabacum nta-MIR399d precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
4 open access papers mention nta-MIR399d
(11 sentences)

Sequence

aauagugguagggcuacucucuauuggcaugcacuuaauuauguauagugauuccacuuaaucaucacauauauacuucaguugacaCGCCAAAGGAGAGCUGCCCUGuuacuaucuc
.(((((((((((((..((((((.(((((.((((((.((.(((((((.(((((...........)))))))))))).)).)).)).)).))))).))))))..)))))))))))))...

Structure
--a             ua      a     a  -  -  u  u       a     ucca 
   auagugguagggc  cucucu uuggc ug ca cu aa uauguau gugau    c
   |||||||||||||  |||||| ||||| || || || || ||||||| |||||    u
   uaucauuGUCCCG  GAGAGG AACCG ac gu ga uu auauaua cacua    u
cuc             UC      A     C  a  u  c  c       -     cuaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR399d

Accession MIMAT0024716
Description Nicotiana tabacum nta-miR399d mature miRNA
Sequence 88 - CGCCAAAGGAGAGCUGCCCUG - 108
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28