Stem-loop hvu-MIR6189

Accession

MI0021504

Description

Hordeum vulgare hvu-MIR6189 precursor miRNA

Sequence

ggguugaaaaAGGUGAUGCUGUGGUGAUCUacuugccgaugcucauggagcugccuauugcaaugcuugcaugcgcccgcauuggugcuguucacucugucguguuugcuggcuucucugccgaugcaauagcccagaggaucacugacugcaagccu
..........((((..(((.(((((((((.....((((((((.(((((((((((.....)))..)))).)))).....))))))))........(((((..((..((((((((......))))..))))..)).)))))))))))).)).))).))))

Structure

ggguugaaaa    GA   U  -       ------------------------------------------------Uacuu        ----u    -    --   c 
          AGGU  UGC GU GGUGAUC                                                     gccgaugc     caug gagc  ugc u
          ||||  ||| || |||||||                                                     ||||||||     |||| ||||  ||| a
          uccg  acg ca ucacuag                                                     ugguuacg     guac uucg  acg u
----------    -a   u  g       gagacccgauaacguagccgucucuucggucguuugugcugucucacuugucg        cccgc    g    ua   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature hvu-miR6189

• Accession: MIMAT0024814
• Description: Hordeum vulgare hvu-miR6189 mature miRNA
• Sequence: 11 - AGGUGAUGCUGUGGUGAUCU - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22489137
   Identification and characterization of microRNAs from barley (Hordeum vulgare L.) by high-throughput sequencing
   Lv S, Nie X, Wang L, Du X, Biradar SS, Jia X, Weining S
   Int J Mol Sci (2012) 13:2973-2984