Stem-loop osa-MIR1440b

Accession

MI0021593

Description

Oryza sativa osa-MIR1440b precursor miRNA

Gene family

MIPF0001531; MIR1440

Literature search

4 open access papers mention osa-MIR1440b
(9 sentences)

Sequence

73 reads, 42 reads per million, 2 experiments

aaaugccagugcucaaauaccacucucccaaauuuucauuaccaaauaccauccgggcccacaugucagccucacuuuccauucaaacaaaagugaugugggacccugugcuggaugaggcugacaugugggcccgggugguauuugggaauggaaaUUUAGGAGAGUGGUAUUUGAGcauuggcauu
.(((((((((((((((((((((((((((.((((((((((..(((((((((((((((((((((((((((((((((..(((((((((........))).)))))).((......)).)))))))))))))))))))))))))))))))))..)))))))))).)))))))))))))))))))))))))))

Structure

a                           c          ua                                 ----------cu      -   aac 
 aaugccagugcucaaauaccacucucc aaauuuucau  ccaaauaccauccgggcccacaugucagccuca            uuccau uca   a
 ||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||            |||||| |||    
 uuacgguuacGAGUUUAUGGUGAGAGG UUUaaaggua  gguuuauggugggcccggguguacagucggagu            agggug agu   a
-                           A          ag                                 aggucguguccc      u   gaa 

Annotation confidence Not enough data

Genome context

Chr9: 5980506-5980693 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1440b

Mature osa-miR1440b

• Accession: MIMAT0024866
• Description: Oryza sativa osa-miR1440b mature miRNA
• Sequence: 158 - UUUAGGAGAGUGGUAUUUGAG - 178
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22585409
   Novel miRNAs in the control of arsenite levels in rice
   "Liu Q"
   "Funct Integr Genomics (2012) 12:649-658