miRBase entry: osa-MIR6249a

Stem-loop osa-MIR6249a


Accession
MI0021598
Description
Oryza sativa osa-MIR6249a precursor miRNA

Literature search
2 open access papers mention osa-MIR6249a
(4 sentences)

Sequence

346 reads, 253 reads per million, 2 experiments
ccaucccgcgCGUGAAGAGCUCGCCGGCGGCcauggccaucuccaccgccgcgccgaugcugccuugccgacggcgauuggg
((((((((((.((((.((((((((((((((...(((......))))))))).).))).))).).)))))).))).)).))).

Structure
-   -  -   -  C    A -   -   - -      Cca   cc 
 cca uc ccg cg GUGA G AGC UCG C CGGCGG   ugg  a
 ||| || ||| || |||| | ||| ||| | ||||||   |||   
 ggu ag ggc gc cguu c ucg agc g gccgcc   acc  u
g   u  c   a  -    c g   u   c c      ---   uc 


Annotation confidence Not enough data
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Genome context
Chr3: 744619-744700 [-]

Database links

Mature osa-miR6249a

Accession MIMAT0024871
Description Oryza sativa osa-miR6249a mature miRNA
Sequence 11 - CGUGAAGAGCUCGCCGGCGGC - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22585409
    Novel miRNAs in the control of arsenite levels in rice
    "Liu Q"
    "Funct Integr Genomics (2012) 12:649-658