miRBase entry: osa-MIR5512b

Stem-loop osa-MIR5512b


Accession
MI0021599
Description
Oryza sativa osa-MIR5512b precursor miRNA
Gene family
MIPF0001478; MIR5512

Literature search
1 open access papers mention osa-MIR5512b
(2 sentences)

Sequence

71 reads, 30 reads per million, 2 experiments
auguauuuuuuuagcauuaccauauccuauuuggcaaugaauuucacuuuagacaauccaaucuuaagaacauacucuaguauaugaaauucauugccaaaUAGGAUAUGGUAAUGCUAAAAaaaaauacaa
.(((((((((((((((((((((((((((((((((((((((((((((..(((((......................)))))....)))))))))))))))))))))))))))))))))))..)))))))))).

Structure
a          --                                   --cu     caauccaauc 
 uguauuuuuu  uagcauuaccauauccuauuuggcaaugaauuuca    uuaga          u
 ||||||||||  |||||||||||||||||||||||||||||||||||    |||||           
 acauaaaaaA  AUCGUAAUGGUAUAGGAUaaaccguuacuuaaagu    gaucu          u
a          AA                                   auau     cauacaagaa 


Annotation confidence Not enough data
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Genome context
Chr4: 18386979-18387110 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR5512b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR5512b

Accession MIMAT0024872
Description Oryza sativa osa-miR5512b mature miRNA
Sequence 102 - UAGGAUAUGGUAAUGCUAAAA - 122
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22585409
    Novel miRNAs in the control of arsenite levels in rice
    "Liu Q"
    "Funct Integr Genomics (2012) 12:649-658