Stem-loop osa-MIR6251

Accession

MI0021601

Description

Oryza sativa osa-MIR6251 precursor miRNA

Literature search

1 open access papers mention osa-MIR6251
(2 sentences)

Sequence

64 reads, 54 reads per million, 2 experiments

uggcaugccaUGUGUAGCCACAUUGUAAGGGaguccuugugcacauggucaaucucgcagaaagcccacugcaauccaaaucuucuucacgauuguuccuauucaccaaaucacccgucuucucgaaugaccgcccaccauuucccucuguugcuguugcuaacauccauggcccagggacccacuugcagcguggcuacauguggcaugccac
(((((((((((((((((((((.(((((((((.(((((((.((.(((((........((((........))))......((((........))))................(((..((......))..)))..................((((((....)).)))).))))))).))))))))).))))))).))))))))))))))))))))).

Structure

-                     A       -  a       u  a     ucaaucucgcagaaagcccacugcaauccaaaucuucuucacgauuguuccuauucaccaaaucacccgucuucucgaaugaccgcccaccauuucccuc    -  u 
 uggcaugccaUGUGUAGCCAC UUGUAAG GG guccuug gc caugg                                                                                                    uguu gc g
 ||||||||||||||||||||| ||||||| || ||||||| || |||||                                                                                                    |||| ||  
 accguacgguguacaucggug gacguuc cc cagggac cg guacc                                                                                                    acaa cg u
c                     c       a  -       c  -     ---------------------------------------------------------------------------------------------------u    u  u 

Annotation confidence Not enough data

Genome context

Chr9: 15792337-15792550 [+]

Mature osa-miR6251

• Accession: MIMAT0024874
• Description: Oryza sativa osa-miR6251 mature miRNA
• Sequence: 11 - UGUGUAGCCACAUUGUAAGGG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22585409
   Novel miRNAs in the control of arsenite levels in rice
   "Liu Q"
   "Funct Integr Genomics (2012) 12:649-658