Stem-loop sequence osa-MIR6251

Accession

MI0021601 (change log)

Description

Oryza sativa miR6251 stem-loop

Literature search

1 open access papers mention osa-MIR6251
(2 sentences)

Stem-loop

   -                     a       -  a       u  a   ggucaaucucgcagaaagcccacugcaauccaaaucuucuucacgauuguuccuauucac 
5'  uggcaugccauguguagccac uuguaag gg guccuug gc cau                                                            c
    ||||||||||||||||||||| ||||||| || ||||||| || |||                                                             
3'  accguacgguguacaucggug gacguuc cc cagggac cg gua                                                            a
   c                     c       a  -       c  -   ccuacaaucguugucguugucucccuuuaccacccgccaguaagcucuucugcccacuaa 

Deep sequencing

67 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr9: 15792337-15792550 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0021601

Mature sequence osa-miR6251

• Accession: MIMAT0024874
• Sequence: 11 - uguguagccacauuguaaggg - 31
• Deep sequencing: 61 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:22585409 "Novel miRNAs in the control of arsenite levels in rice" Liu Q Funct Integr Genomics. 12:649-658(2012).