miRBase entry: osa-MIR6254

Stem-loop osa-MIR6254


Accession
MI0021604
Description
Oryza sativa osa-MIR6254 precursor miRNA


Sequence

26 reads, 19 reads per million, 2 experiments
aauugcauaaUGCUCCGGAUAUUAUGGCAUGuagcauauaacccuagucauuaugguaucaagguuucgcaaaacccagcauucacucaaaucauaaaaaaaacaacuuguugacacauauucacuucauuuuucaugccauaaaccacuauguauuguucaaauguugguuacuugaucaggaugaccaguuuaaucagucaacguuuugaacauuauuaugucaaggaugguaaaauuagcugaaauuugaacuaggauggauuuuaugauacuucuagguuauagagcauaggguuaugugccucgagucauaauauccggagguuuaugcaacu
..((((((((..((((((((((((((((.((..(((((((((((((((......(((((((.(((((....)))))(((((...........................))))).....(((((..((((..(((((((((((.....((...(((.((((((((((((((((..((((.(.((....)).).))))..)))))))).)))))))).)))...)).....))))))........)))))..))))...))))).......)))))))((((.....)))))).)))))))))))))..)).))))))))))))))))..))))))))..

Structure
aa        UG                A  ua             -  -------cauuau       agguuucgcaaaacccagcauucacucaaaucauaaaaaaaacaacuuguugacaca     -ac    uu     --------      aaacc  uau   u        -        ac    u a  a 
  uugcauaa  CUCCGGAUAUUAUGGC UG  gcauauaacccua gu             gguauca                                                         uauuc   uuca  uuuca        ugccau     ac   gua uguucaaa uguugguu  uuga c gg u
  ||||||||  |||||||||||||||| ||  ||||||||||||| ||             |||||||                                                         |||||   ||||  |||||        ||||||     ||   ||| |||||||| ||||||||  |||| | ||  
  aacguauu  gaggccuauaauacug gc  cguguauugggau cg             ucauagu                                                         guagg   aagu  aaagu        auggua     ug   uau acaaguuu gcaacuga  aauu g cc g
uc        ug                a  uc             a  agauauuggaucu       --------------------------------------------------auuuuag     auc    uu     cgauuaaa      ggaac  uau   u        u        cu    u a  a 


Annotation confidence Not enough data
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Genome context
Chr12: 1970862-1971199 [+]

Database links

Mature osa-miR6254

Accession MIMAT0024877
Description Oryza sativa osa-miR6254 mature miRNA
Sequence 11 - UGCUCCGGAUAUUAUGGCAUG - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22585409
    Novel miRNAs in the control of arsenite levels in rice
    "Liu Q"
    "Funct Integr Genomics (2012) 12:649-658