miRBase entry: ppe-MIR6265

Stem-loop ppe-MIR6265


Accession
MI0021621
Description
Prunus persica ppe-MIR6265 precursor miRNA


Sequence

caauugguccUUGAACUUUGACCCGAUUCGCAUuuuggucucucaauuuucaaaaucguucacgucaaaaugcaaaucgggucaaaauucaaauaccauuaa
....((((..(((((.((((((((((((.(((((((((.(.......................)))))))))).)))))))))))).)))))..))))....

Structure
caau    cc     C            C         u ucucaauuuu 
    uggu  UUGAA UUUGACCCGAUU GCAUuuugg c          c
    ||||  ||||| |||||||||||| ||||||||| |          a
    acca  aacuu aaacugggcuaa cguaaaacu g          a
aauu    ua     a            a         - cacuugcuaa 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG3: 19142223-19142324 [+]

Database links

Mature ppe-miR6265

Accession MIMAT0027284
Description Prunus persica ppe-miR6265 mature miRNA
Sequence 11 - UUGAACUUUGACCCGAUUCGCAU - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371