Stem-loop sequence ppe-MIR171a

AccessionMI0021623 (change log)
DescriptionPrunus persica miR171a stem-loop
Gene family MIPF0000030; MIR171_1
Literature search

6 open access papers mention ppe-MIR171a
(16 sentences)

   --aau   u    uua   g        uc         a         u    uaa 
5'      gga cggu   acg gauauugg  cgguucaau agaaagcag gcuc   g
        ||| ||||   ||| ||||||||  ||||||||| ||||||||| ||||   u
3'      ccu guca   ugc cuauaacc  gccgaguua uuuuucguc cgag   g
   uauuu   u    ccg   a        gu         g         u    uuc 
Get sequence
Confidence Annotation confidence: not enough data
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Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2) Overlapping transcripts
chrG3: 21899734-21899848 [+]
Clustered miRNAs
< 10kb from ppe-MIR171a
ppe-MIR171achrG3: 21899734-21899848 [+]
ppe-MIR171echrG3: 21899742-21899838 [-]
Database links

Mature sequence ppe-miR171a

Accession MIMAT0027286

75 - 


 - 95

Get sequence
Evidence experimental; Illumina [1]