miRBase entry: ppe-MIR6267b

Stem-loop ppe-MIR6267b


Accession
MI0021634
Description
Prunus persica ppe-MIR6267b precursor miRNA
Gene family
MIPF0001656; MIR6267


Sequence

ggaaugcuagagagaccacauuauuguaccaccucucuaauagagguagggcugcucaccaauacaaguagguccaaacuccAUUAGAGAGGCGGUAAACAAUauaguacaau
.................((..(((((((((.((((((((((.(((...((((((((..........)))).))))...))).)))))))))).)))..))))))..)).....

Structure
ggaaugcuagagagacc  au      --   a          a   gua    -    cacc 
                 ac  uauugu  acc ccucucuaau gag   gggc ugcu    a
                 ||  ||||||  ||| |||||||||| |||   |||| ||||     
                 ug  aUAACA  UGG GGAGAGAUUA cuc   ccug auga    a
------------uaaca  au      AA   C          c   aaa    g    acau 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG4: 13697254-13697366 [-]

Database links

Mature ppe-miR6267b

Accession MIMAT0027297
Description Prunus persica ppe-miR6267b mature miRNA
Sequence 83 - AUUAGAGAGGCGGUAAACAAU - 103
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371