miRBase entry: ppe-MIR6288a

Stem-loop ppe-MIR6288a


Accession
MI0021657
Description
Prunus persica ppe-MIR6288a precursor miRNA
Gene family
MIPF0001696; MIR6288


Sequence

aaaccaaaaacuagccacuugucauuuucuaauuaguucuuaguguguuaaaauuuuuuaagaaccgauuaGAAAAUGACAAGUGGCUAGUUuugaauuu
......((((((((((((((((((((((((((((.((((((((..............)))))))).))))))))))))))))))))))))))))......

Structure
aaacca                            a        uguguu 
      aaaacuagccacuugucauuuucuaauu guucuuag      a
      |||||||||||||||||||||||||||| ||||||||       
      uuUUGAUCGGUGAACAGUAAAAGauuag caagaauu      a
uuuaag                            c        uuuuaa 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG2: 22319732-22319831 [+]

Database links

Mature ppe-miR6288a

Accession MIMAT0027320
Description Prunus persica ppe-miR6288a mature miRNA
Sequence 72 - GAAAAUGACAAGUGGCUAGUU - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371