miRBase entry: ppe-MIR6290

Stem-loop ppe-MIR6290


Accession
MI0021662
Description
Prunus persica ppe-MIR6290 precursor miRNA


Sequence

auaaugagaguaagcagaagucuugagccguuccuguucuugcuggaauauuacugcugugauUGAAUGAGUUCAGAGAUCGUGUAcauaagaaag
.........(((.((.((..(((.(((((((((..(((((....)))))(((((....))))).))))).)))))))..)))).))).........

Structure
auaaugaga   a  a  ag   u    -     -------------cu     u 
         gua gc ga  ucu gagc cguuc               guucu g
         ||| || ||  ||| |||| |||||               |||||  
         cAU UG CU  AGA CUUG GUAAG               uaagg c
gaaagaaua   G  -  AG   -    A     Uuagugucgucauua     u 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG4: 24414214-24414309 [+]

Database links

Mature ppe-miR6290

Accession MIMAT0027325
Description Prunus persica ppe-miR6290 mature miRNA
Sequence 64 - UGAAUGAGUUCAGAGAUCGUGUA - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371