miRBase entry: ppe-MIR6294

Stem-loop ppe-MIR6294


Accession
MI0021667
Description
Prunus persica ppe-MIR6294 precursor miRNA


Sequence

uggcacaacagauugugauuagccuacaccaagaugcaccaauacugcuagacuaaucacugaccauaaucaguaggaauuccggaccaaauugaauugaaggugcauaauugggugcaaugcuuuaauugacauugcucuagcaaucccacagagacagcauuggugcaucgUGGUGUAGGCUAAUCACAAUCuguuuuauac
......(((((((((((((((((((((((((.(((((((((((.(((((.........(((((......))))).((.((((.(((.(((..(.((((((((.(((((......)))))...)))))))).)..))).))).).))).))....)).))).))))))))))).)))))))))))))))))))))))))......

Structure
uggcac                         a           a   -  agacuaaucacugaccauaaucagua  a   - c   c   au g        --g     aa 
      aacagauugugauuagccuacacca gaugcaccaau cug cu                          gg auu c gga caa  u aauugaag   ugcau  u
      ||||||||||||||||||||||||| ||||||||||| ||| ||                          || ||| | ||| |||  | ||||||||   |||||   
      uuguCUAACACUAAUCGGAUGUGGU cuacgugguua gac ga                          cc uaa g ucu guu  a uuaauuuc   acgug  u
cauauu                         g           c   a  ----------------------gaca  c   c a   c   ac g        gua     gg 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG5: 18318443-18318646 [+]

Database links

Mature ppe-miR6294

Accession MIMAT0027330
Description Prunus persica ppe-miR6294 mature miRNA
Sequence 174 - UGGUGUAGGCUAAUCACAAUC - 194
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371