miRBase entry: gma-MIR393e

Stem-loop gma-MIR393e


Accession
MI0021706
Description
Glycine max gma-MIR393e precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
21 open access papers mention gma-MIR393e
(49 sentences)

Sequence

ggaggaggcaUCCAAAGGGAUCGCAUUGAUCCcaaauuucagauuuauaaauuugucuuucucuucccuugucaauauuugggaucauuucucuucccuucucaauauuugggaucaugcuaucccuuuggauuccuccuu
.(((((((.((((((((((((.((((.((((((((((..((((((....)))))).........................((((..........))))........)))))))))))))).)))))))))))).)))))))

Structure
g       c            C    U          -------------------------------------------------uu      u 
 gaggagg aUCCAAAGGGAU GCAU GAUCCcaaau                                                   cagauu a
 ||||||| |||||||||||| |||| ||||||||||                                                   ||||||  
 uuccucc uagguuucccua cgua cuaggguuua                                                   guuuaa u
-       u            u    -          uaacucuucccuucucuuuacuaggguuuauaacuguucccuucucuuucu      a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr14: 5137829-5137969 [+]

Database links

Mature gma-miR393e

Accession MIMAT0024912
Description Glycine max gma-miR393e mature miRNA
Sequence 11 - UCCAAAGGGAUCGCAUUGAUCC - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22559273
    Genome organization and characteristics of soybean microRNAs
    Turner M, Yu O, Subramanian S
    BMC Genomics (2012) 13:169