miRBase entry: sma-mir-2d

Stem-loop sma-mir-2d


Accession
MI0021823
Description
Schistosoma mansoni sma-mir-2d precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
4 open access papers mention sma-mir-2d
(11 sentences)

Sequence

cgaccaguucGUCAUCCUUGGAUUGUGAUUuuccgaaauaaaauuuuaugaauagaaUAUCACAGUCCUGCUUAGGUGAcgaauuucg
(((..(((((((((((...((((((((((.(((....((((....)))).....))).))))))))))......))))))))))))))

Structure
   cc           ---CUU          U   -cgaa    a 
cga  aguucGUCAUC      GGAUUGUGAU uuc     auaa a
|||  |||||||||||      |||||||||| |||     ||||  
gcu  uuaagcAGUGG      CCUGACACUA aag     uauu u
   --           AUUCGU          U   auaag    u 


Annotation confidence Not enough data
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Genome context
Chr_5: 1982526-1982613 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from sma-mir-2d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sma-miR-2d-3p

Accession MIMAT0025035
Description Schistosoma mansoni sma-miR-2d-3p mature miRNA
Sequence 58 - UAUCACAGUCCUGCUUAGGUGA - 79
Evidence experimental
Illumina [2], SOLiD [2]

Mature sma-miR-2d-5p

Accession MIMAT0032135
Description Schistosoma mansoni sma-miR-2d-5p mature miRNA
Sequence 11 - GUCAUCCUUGGAUUGUGAUU - 30
Evidence experimental
Illumina [2], SOLiD [2]

References

  1. PubMed ID: 21640815
    Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
    "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
    "Genomics (2011) 98:96-111

  2. PubMed ID: 24069470
    Sex-biased expression of microRNAs in Schistosoma mansoni
    Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
    PLoS Negl Trop Dis (2013) 7:e2402