miRBase entry: sma-mir-61

Stem-loop sma-mir-61


Accession
MI0021829
Description
Schistosoma mansoni sma-mir-61 precursor miRNA
Gene family
MIPF0001758; mir-61_2

Literature search
1 open access papers mention sma-mir-61
(2 sentences)

Sequence

gcUGUGGGUCUCUUUCUUGUCCAUgguauaguaguugaagcucacugcuuuagugugcauccucuuuacaucacaUGACUAGAAAGUGCACUCACUUc
...(((((((.((((((.(((.(((..((.((((..((.((.(((((...))))).)).))....))))))..)))))).)))))).).))))))...

Structure
gcU      - U      U   C   gu  a    --uu  a  u     c 
   GUGGGU C CUUUCU GUC AUg  au guag    ga gc cacug  
   |||||| | |||||| ||| |||  || ||||    || || ||||| u
   CACUCA G GAAAGA CAG Uac  ua cauu    cu cg gugau  
cUU      C U      U   -   ac  -    ucuc  a  u     u 


Annotation confidence Not enough data
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Genome context
Chr_2: 25390606-25390703 [+]

Database links

Mature sma-miR-61-3p

Accession MIMAT0025042
Description Schistosoma mansoni sma-miR-61-3p mature miRNA
Sequence 76 - UGACUAGAAAGUGCACUCACUU - 97
Evidence experimental
Illumina [2], SOLiD [2]

Mature sma-miR-61-5p

Accession MIMAT0032138
Description Schistosoma mansoni sma-miR-61-5p mature miRNA
Sequence 3 - UGUGGGUCUCUUUCUUGUCCAU - 24
Evidence experimental
Illumina [2], SOLiD [2]

References

  1. PubMed ID: 21640815
    Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
    "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
    "Genomics (2011) 98:96-111

  2. PubMed ID: 24069470
    Sex-biased expression of microRNAs in Schistosoma mansoni
    Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
    PLoS Negl Trop Dis (2013) 7:e2402