miRBase entry: rno-mir-3102

Stem-loop rno-mir-3102


Accession
MI0021836
Description
Rattus norvegicus rno-mir-3102 precursor miRNA
Gene family
MIPF0001469; mir-3102

Literature search
1 open access papers mention rno-mir-3102
(2 sentences)

Sequence

23001 reads, 60 reads per million, 426 experiments
cgcagcuccaugagccugugaguggccaggguggggcuggguggugcaggcaggagagccauugaucuauugcgggCUCUACUCCCUGCCCCAGCCAgagcaccccauuggcuacccacagguacacagcugccagu
.((((((...((.(((((((.(((((((..((((((((((.(((.(((((.((.((((((..............)))))).)).))))).))).))))....))))))))))))).))))))).)).))))))....

Structure
---c      cca  a       a       gg      ----    g   u     c  g      auugau 
    gcagcu   ug gccugug guggcca  gugggg    cugg ugg gcagg ag agagcc      c
    ||||||   || ||||||| |||||||  ||||||    |||| ||| ||||| || ||||||       
    cgucga   ac uggacac caucggu  uacccc    gACC ACC CGUCC UC UCUCgg      u
ugac      --c  a       c       --      acga    G   C     C  A      gcguua 


Annotation confidence High
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Genome context
chr1: 165921184-165921320 [-]

Database links

Mature rno-miR-3102

Accession MIMAT0025051
Description Rattus norvegicus rno-miR-3102 mature miRNA
Sequence 77 - CUCUACUCCCUGCCCCAGCCA - 97
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22605339
    Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
    "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
    "J Biol Chem (2012) 287:24397-24411

  2. PubMed ID: 22908386
    MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
    "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
    "J Biol Chem (2012) 287:25312-25324