Stem-loop rno-mir-6332

Accession

MI0021858

Description

Rattus norvegicus rno-mir-6332 precursor miRNA

Sequence

11 reads, 3 reads per million, 10 experiments

uaacccaggucuugguugccacggcuucucauuagcuccuuaagaucccuguggagcacugguugcucCGCAGGGACUGCAAGGAGCCGCAggacagauggcagcugcuuggacugcucuc
....((((((...(((((((((.(.((((.....(((((((.((.(((((((((((((.....)))))))))))))))..)))))))...))))).).)))))))))))))).........

Structure

-----uaac      cuu        - g c    cauua       -a  a             c 
         ccaggu   gguugcca c g uucu     gcuccuu  ag ucccuguggagca u
         ||||||   |||||||| | | ||||     |||||||  || ||||||||||||| g
         gguucg   ucgacggu g c aggA     CGAGGAA  UC AGGGACGCcucgu g
cucucguca      ---        a a -    --CGC       CG  -             u 

Annotation confidence Not enough data

Genome context

chr5: 167402968-167403088 [+]

Mature rno-miR-6332

• Accession: MIMAT0025073
• Description: Rattus norvegicus rno-miR-6332 mature miRNA
• Sequence: 69 - CGCAGGGACUGCAAGGAGCCGCA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


2. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324