Stem-loop sequence ptc-MIR6459a

AccessionMI0021965 (change log)
DescriptionPopulus trichocarpa miR6459a stem-loop
Gene family MIPF0001730; MIR6459
Literature search

1 open access papers mention ptc-MIR6459a
(1 sentences)

Stem-loop 
   u    agu     u   g       a            u    aacaa g 
5'  gcag   agaag cga cucaagc caaauucgaucu gcuu     g u
    ||||   ||||| ||| ||||||| |||||||||||| ||||     |  
3'  cguu   ucuuc guu gaguucg guuuaagcuaga ugaa     c a
   a    gcu     u   a       g            c    -acgg c
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000339.2: 9383289-9383389 [+]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR6459a
ptc-MIR6459aCM000339.2: 9383289-9383389 [+]
ptc-MIR6459bCM000339.2: 9383296-9383382 [-]
Database links

Mature sequence ptc-miR6459a-5p

Accession MIMAT0025184
Sequence

17 -  

agcucaagcacaaauucgauc

 - 37

Get sequence
Evidence experimental; miRNAseq [1], Illumina [2]

Mature sequence ptc-miR6459a-3p

Accession MIMAT0025185
Sequence

67 -  

ucgaauuugggcuugagauug

 - 87

Get sequence
Evidence experimental; miRNAseq [1], Illumina [2]

References

1
PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).
2
PMID:23570526 "Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis" Shuai P, Liang D, Zhang Z, Yin W, Xia X BMC Genomics. 14:233(2013).