miRBase entry: ptc-MIR6463

Stem-loop ptc-MIR6463


Accession
MI0021969
Description
Populus trichocarpa ptc-MIR6463 precursor miRNA


Sequence

cauuguaggacauucgucggcaaccauuuagucauguuugcuaacaugaccguccaaguuaucaauuaugucagguuacauuaaggaagcuggcaugagcaugccaucaaaguuguugacauguuugucaucuUGGAUGAUCAUGUUGGCAACCauguugaugugguagaucaugugcugcguaug
((((((((.((((..(((....(((((((((.((((.((((((((((((.((((((((....(((.(((((((....(((.....((...((((((....)))))))).....)))))))))).)))....)))))))).)))))))))))).)))))))).))))).))).)))).))))).)))

Structure
   -     g    uc   ggca     -    u    u            c        uuau   u       gguu   uuaag  agc      g 
cau uguag acau  guc    accau uuag caug uugcuaacauga cguccaag    caa uauguca    aca     ga   uggcau a
||| ||||| ||||  |||    ||||| |||| |||| |||||||||||| ||||||||    ||| |||||||    |||     ||   ||||||  
gua gcguc ugua  uag    uggug aguu guaC AACGGUUGUACU GUAGGUuc    guu guacagu    ugu     cu   accgua g
   u     g    -c   ---a     u    -    C            A        uacu   u       ----   ugaaa  ---      c 


Annotation confidence Not enough data
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Genome context
CM000340.2: 6132645-6132830 [+]

Database links

Mature ptc-miR6463

Accession MIMAT0025189
Description Populus trichocarpa ptc-miR6463 mature miRNA
Sequence 134 - UGGAUGAUCAUGUUGGCAACC - 154
Evidence experimental
miRNAseq [1], Illumina [2]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034

  2. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233