miRBase entry: ptc-MIR6425a

Stem-loop ptc-MIR6425a


Accession
MI0021970
Description
Populus trichocarpa ptc-MIR6425a precursor miRNA
Gene family
MIPF0001386; MIR6425


Sequence

ggacccaugcauggcgaacaaguugagcuguaggguuaugaugaacaugcuaauuacaagcuaUUGUCUUCCAUGGAAUAGGCAGugauggcauuuguuuuauuuuccugagguggagaaaaacaaauagaccauaacacuguuauUCCAUGGAAGAUAAUGACUCGugguugacacuugaucucuccaguccaguucagauucaagcuagcugcugucu
((((....((.((((.......((((((((...((....(((.((..((.(((((((.((.((((((((((((((((((((.(((((((((((((((((((..(((((......)))))))))))))).).))))..))))))))))))))))))))))))).)).))))))).)).)).)))...))....))))))))......))))))....))))

Structure
    ccau  a    gaacaag        -uag  uuau   g  ca  c       a  c                    G     --    - -         au     ug 
ggac    gc uggc       uugagcug    gg    gau aa  ug uaauuac ag uaUUGUCUUCCAUGGAAUAG CAGug  augg c auuuguuuu  uuucc  a
||||    || ||||       ||||||||    ||    ||| ||  || ||||||| || |||||||||||||||||||| |||||  |||| | |||||||||  |||||   
ucug    cg aucg       gacuugac    cc    cua uu  ac guugguG UC GUAAUAGAAGGUACCUuauu gucac  uacc g uaaacaaaa  agagg  g
    ucgu  -    -aacuua        cuga  -ucu   g  -c  a       C  A                    -     aa    a a         --     ug 


Annotation confidence Not enough data
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Genome context
CM000337.2: 20468178-20468397 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptc-MIR6425a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR6425a-5p

Accession MIMAT0025190
Description Populus trichocarpa ptc-miR6425a-5p mature miRNA
Sequence 64 - UUGUCUUCCAUGGAAUAGGCAG - 85
Evidence experimental
miRNAseq [1]

Mature ptc-miR6425a-3p

Accession MIMAT0025191
Description Populus trichocarpa ptc-miR6425a-3p mature miRNA
Sequence 147 - UCCAUGGAAGAUAAUGACUCG - 167
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034