miRBase entry: ptc-MIR6464

Stem-loop ptc-MIR6464


Accession
MI0021971
Description
Populus trichocarpa ptc-MIR6464 precursor miRNA


Sequence

agaugauauuuuuuuauuuugaaaauuaUGAUUGCUUGUUGGAUAUUAUacauauuauauaauauguauaauauccaacaagcaaucauaauuucuugcaaagcgaugagaauucacu
...(((.((((((...(((((.((((((((((((((((((((((((((((((((((....))))))))))))))))))))))))))))))))))....)))))....)))))))))..

Structure
aga   u      -uua     ---a                                  a 
   uga auuuuu    uuuug    aaauuaUGAUUGCUUGUUGGAUAUUAUacauauu u
   ||| ||||||    |||||    ||||||||||||||||||||||||||||||||||  
   acu uaagag    gaaac    uuuaauacuaacgaacaaccuauaauauguauaa a
-uc   -      uagc     guuc                                  u 


Annotation confidence Not enough data
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Genome context
CM000340.2: 6850844-6850961 [+]

Database links

Mature ptc-miR6464

Accession MIMAT0025192
Description Populus trichocarpa ptc-miR6464 mature miRNA
Sequence 29 - UGAUUGCUUGUUGGAUAUUAU - 49
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034