miRBase entry: ptc-MIR6465

Stem-loop ptc-MIR6465


Accession
MI0021972
Description
Populus trichocarpa ptc-MIR6465 precursor miRNA


Sequence

aaggcucuuuaacuuuaUUAAAGCAGGGGGUCUAGUAGUuuaacuauuuagaagauagauuuuaaauaaggcucuuuaacuuaugauauauuuaaaagcuaucuucuaacuaguuaaacuaccagaccccugcuuuaauauaaaguaauaaucacccuu
((((....(((((((((((((((((((((.(((.((((((((((((.(((((((((((.(((((((((...(............)...))))))))).))))))))))).)))))))))))).))))))))))))))..)))))))..)))....))))

Structure
    cucu   --       --           G   A            u           a         agg ucuuu 
aagg    uua  acuuuaU  UAAAGCAGGGG UCU GUAGUuuaacua uuagaagauag uuuuaaaua   c     a
||||    |||  |||||||  ||||||||||| ||| |||||||||||| ||||||||||| |||||||||   |      
uucc    aau  ugaaaua  auuucgucccc aga caucaaauugau aaucuucuauc aaaauuuau   g     a
    cacu   aa       ua           -   c            c           g         aua uauuc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000340.2: 8528101-8528259 [+]

Database links

Mature ptc-miR6465

Accession MIMAT0025193
Description Populus trichocarpa ptc-miR6465 mature miRNA
Sequence 18 - UUAAAGCAGGGGGUCUAGUAGU - 39
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034