miRBase entry: ptc-MIR6468

Stem-loop ptc-MIR6468


Accession
MI0021978
Description
Populus trichocarpa ptc-MIR6468 precursor miRNA


Sequence

guaaugcuaaaagccccaaaaguuggaacccaaauGUUUUCCCUGAAUCACUCCCAccauugauuggugggcuccaugcaccaauuaaacagugGGAGUGAUUCAGGGAACCCAUucaggcucaucggacucuuagguuugauuaguaugc
...((((((((((((.....((((.((.((..((((..(((((((((((((((((((..((((((((((.........))))))))))...)))))))))))))))))))..))))..))....)).))))....)))))..)))))))..

Structure
gua       --     ccaaa    g  ---a  ca    UU                   -ca          ggc 
   augcuaa  aagcc     aguu ga    cc  aauG  UUCCCUGAAUCACUCCCAc   uugauuggug   u
   |||||||  |||||     |||| ||    ||  ||||  |||||||||||||||||||   ||||||||||   c
   uaugauu  uuugg     ucag cu    gg  uUAC  AAGGGACUUAGUGAGGgug   aauuaaccac   c
-cg       ag     -auuc    g  acuc  ac    CC                   aca          gua 


Annotation confidence Not enough data
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Genome context
CM000341.2: 21920795-21920945 [-]

Database links

Mature ptc-miR6468-3p

Accession MIMAT0025201
Description Populus trichocarpa ptc-miR6468-3p mature miRNA
Sequence 95 - GGAGUGAUUCAGGGAACCCAU - 115
Evidence experimental
miRNAseq [1], Illumina [2]

Mature ptc-miR6468-5p

Accession MIMAT0027337
Description Populus trichocarpa ptc-miR6468-5p mature miRNA
Sequence 36 - GUUUUCCCUGAAUCACUCCCA - 56
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034

  2. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233