miRBase entry: ptc-MIR6457b

Stem-loop ptc-MIR6457b


Accession
MI0021980
Description
Populus trichocarpa ptc-MIR6457b precursor miRNA
Gene family
MIPF0001534; MIR6457


Sequence

aaugagagaagagucgagcaaaacuaaaagaggaaacuaaucuaucucccugcaaaaugcugccaagcaacaucgucuagaucuuaaauauaagaucaagccgaaguugguuugcugcacuuugcugggagauuagauuaguuuccucuuUUAGUUUGGCAGCCUCUUCUCuuauu
(((((((((((((.(..((.((((((((((((((((((((((((((((((.(((((.(((.((.((.((((.(((.((.(((((((....))))))).)).))).)))).)).)).))).))))).)))))).)))))))))))))))))))))))).)).).)))))))))))))

Structure
             u ga  a                        -      u     a   u  c  g    a   u  a       a 
aaugagagaagag c  gc aaacuaaaagaggaaacuaaucua ucuccc gcaaa ugc gc aa caac ucg cu gaucuua a
||||||||||||| |  || |||||||||||||||||||||||| |||||| ||||| ||| || || |||| ||| || |||||||  
uuauuCUCUUCUC G  CG UUUGAUUuucuccuuugauuagau agaggg cguuu acg cg uu guug agc ga cuagaau u
             C -A  G                        u      u     c   u  u  g    a   c  a       a 


Annotation confidence Not enough data
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Genome context
CM000341.2: 24262248-24262423 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from ptc-MIR6457b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR6457b

Accession MIMAT0025203
Description Populus trichocarpa ptc-miR6457b mature miRNA
Sequence 151 - UUAGUUUGGCAGCCUCUUCUC - 171
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034