miRBase entry: ptc-MIR6425c

Stem-loop ptc-MIR6425c


Accession
MI0021983
Description
Populus trichocarpa ptc-MIR6425c precursor miRNA
Gene family
MIPF0001386; MIR6425


Sequence

ggacucaugcauggcgaacaaguugagcuguaggguuaugaugaacaugcuaauuacaagcuaUUGUCUUCCAUGGAAUAGGCAGugauggcauuuguuuuauuuuccugagguggagaaaaacaaggagaccauaacacuguuauUCCAUGGAAGAUAAUGACUCGugguugacacuugaucucuccaguccaguucagauucaagcuagcugcugucu
((((.((.((.((((.......((((((((...((....(((.((..((.(((((((.((.((((((((((((((((((((.((((((((((.((((((((..(((((......)))))))))))))..).))))..))))))))))))))))))))))))).)).))))))).)).)).)))...))....))))))))......))))))))..))))

Structure
    -u  u  a    gaacaag        -uag  uuau   g  ca  c       a  c                    G     --    - -a        au     ug 
ggac  ca gc uggc       uugagcug    gg    gau aa  ug uaauuac ag uaUUGUCUUCCAUGGAAUAG CAGug  augg c  uuuguuuu  uuucc  a
||||  || || ||||       ||||||||    ||    ||| ||  || ||||||| || |||||||||||||||||||| |||||  |||| |  ||||||||  |||||   
ucug  gu cg aucg       gacuugac    cc    cua uu  ac guugguG UC GUAAUAGAAGGUACCUuauu gucac  uacc g  gaacaaaa  agagg  g
    uc  -  -    -aacuua        cuga  -ucu   g  -c  a       C  A                    -     aa    a ag        --     ug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000337.2: 20476147-20476366 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from ptc-MIR6425c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR6425c-5p

Accession MIMAT0025207
Description Populus trichocarpa ptc-miR6425c-5p mature miRNA
Sequence 64 - UUGUCUUCCAUGGAAUAGGCAG - 85
Evidence experimental
miRNAseq [1]

Mature ptc-miR6425c-3p

Accession MIMAT0025208
Description Populus trichocarpa ptc-miR6425c-3p mature miRNA
Sequence 147 - UCCAUGGAAGAUAAUGACUCG - 167
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034