miRBase entry: ptc-MIR6472

Stem-loop ptc-MIR6472


Accession
MI0021986
Description
Populus trichocarpa ptc-MIR6472 precursor miRNA


Sequence

agccUAGUGAAUUCUAGGUCUCAAUCcuuuucauucaauccuuuuaaucuauucuacaucaauugauauugguccaacaucuguugguaucacaguuugacuugauuuaaauccuaaacaaccauaaaaagaagaagccuguucuaaguuuaugggucaagguuuaagauguuguuuaguguuugaauugagguuaagcuaugauauuaauugaugcagcaccaauaucaauugauguaaaaccggcaaaaggaguuaagagaaaggauagagaaccuagaaucuacuaggcu
(((((((((.((((((((((((.((((((((..((...(((((((..((..((.(((((((((((((((((((.(..((((.((((((((((.(((((((((((((((((((.(((((((((............((((((..((((......))))...)))))).....))))))))).))))))))).)))))))))).)))))))))).))))..).))))))))))))))))))).))..)).)))))))...))..)))))))).))).))))))))).)))))))))

Structure
         A         -   A        ca  caa       aa  ua  c                   c aa    u          c          -         c         cauaaaaagaag      -gu    ag 
agccUAGUG AUUCUAGGU CUC AUCcuuuu  uu   uccuuuu  uc  uu uacaucaauugauauuggu c  cauc guugguauca aguuugacuu gauuuaaau cuaaacaac            aagccu   ucua  u
||||||||| ||||||||| ||| ||||||||  ||   |||||||  ||  || ||||||||||||||||||| |  |||| |||||||||| |||||||||| ||||||||| |||||||||            ||||||   ||||   
ucggaucau uaagaucca gag uaggaaag  aa   aggaaaa  gg  aa auguaguuaacuauaacca g  guag uaauuauagu ucgaauugga uuaaguuug gauuuguug            uuugga   gggu  u
         c         a   a        ag  uug       -c  cc  a                   c ac    u          a          g         u         -------uagaa      acu    au 


Annotation confidence Not enough data
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Genome context
CM000343.2: 4183913-4184205 [+]

Database links

Mature ptc-miR6472

Accession MIMAT0025211
Description Populus trichocarpa ptc-miR6472 mature miRNA
Sequence 5 - UAGUGAAUUCUAGGUCUCAAUC - 26
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034