miRBase entry: ptc-MIR6425e

Stem-loop ptc-MIR6425e


Accession
MI0021993
Description
Populus trichocarpa ptc-MIR6425e precursor miRNA
Gene family
MIPF0001386; MIR6425


Sequence

cugagaauuggacucaugcauggcgaacaaguugagcuguaggguuaugaugaacaugcuaauuacaagccaUUGUCUUCCAUGGAAUAGGCAGugauggcauuuguuuuauuuuccugaguuggagaaaaacaaauagaccauaacacuguuauuccuuggaagauaaugacucgugguugacacuugaucucuccaguccaguucagauucaagcuagcugcugucuguaaauucuuug
..(((((((((((.((.((.((((.......((((((((...((....(((.((..((.(((((((.((.((((((((((((.(((((((.(((((((((((((((((((..(((((......)))))))))))))).).))))..)))))))))))).)))))))))))).)).))))))).)).)).)))...))....))))))))......))))))))..))))...)))))))..

Structure
cu       ---    -u  u  a    gaacaag        -uag  uuau   g  ca  c       a  c            U       G     --    - -         au     ug 
  gagaauu   ggac  ca gc uggc       uugagcug    gg    gau aa  ug uaauuac ag caUUGUCUUCCA GGAAUAG CAGug  augg c auuuguuuu  uuucc  a
  |||||||   ||||  || || ||||       ||||||||    ||    ||| ||  || ||||||| || |||||||||||| ||||||| |||||  |||| | |||||||||  |||||   
  uucuuaa   ucug  gu cg aucg       gacuugac    cc    cua uu  ac guuggug uc guaauagaaggu ccuuauu gucac  uacc g uaaacaaaa  agagg  g
gu       aug    uc  -  -    -aacuua        cuga  -ucu   g  -c  a       c  a            u       -     aa    a a         --     uu 


Annotation confidence Not enough data
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Genome context
CM000344.2: 16262332-16262572 [+]

Database links

Mature ptc-miR6425e

Accession MIMAT0025219
Description Populus trichocarpa ptc-miR6425e mature miRNA
Sequence 73 - UUGUCUUCCAUGGAAUAGGCAG - 94
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034