miRBase entry: ptc-MIR6479

Stem-loop ptc-MIR6479


Accession
MI0021996
Description
Populus trichocarpa ptc-MIR6479 precursor miRNA


Sequence

uuaguuaagcgugggcuuuucucugcaaaauuugcaacucaaaguuuccuccagucguuggauuAUCAAUGAGAAUACUACUGCAaaaaauaguccaagaguuuauaauaccaacuaugaaaaaucaaaacagcaaucuuuugcaggaguauucucauugagaauccaacaauuagagaaagcuuugacacaaguuuugcaagaaaaaaggaaagucucaugucucaacuaa
.(((((.(((((((((((((((((((((((((((....(((((((((.(((.(((.((((((((.((((((((((((((.((((((((.((.((....((.((((((........))))))...))......)).)).)))))))).)))))))))))))).)))))))).))).))).)))))))))..)))))))))).))).....)))))))).)))).)).))))).

Structure
u     a  -    -        -----   -          caac         c   c   c        A              A        a  a  --ccaa  --g      aua 
 uaguu ag cgug ggcuuuuc     ucu gcaaaauuug    ucaaaguuu cuc agu guuggauu UCAAUGAGAAUACU CUGCAaaa au gu      ga   uuuaua   c
 ||||| || |||| ||||||||     ||| ||||||||||    ||||||||| ||| ||| |||||||| |||||||||||||| |||||||| || ||      ||   ||||||    
 aucaa uc guac cugaaagg     aga cguuuugaac    aguuucgaa gag uua caaccuaa aguuacucuuauga gacguuuu ua cg      cu   aaguau   c
a     c  u    u        aaaaa   a          --ac         a   a   a        g              g        c  a  acaaaa  aaa      caa 


Annotation confidence Not enough data
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Genome context
CM000345.2: 10675110-10675341 [+]

Database links

Mature ptc-miR6479

Accession MIMAT0025222
Description Populus trichocarpa ptc-miR6479 mature miRNA
Sequence 65 - AUCAAUGAGAAUACUACUGCA - 85
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034