Stem-loop sequence ptc-MIR482d

AccessionMI0022007 (change log)
DescriptionPopulus trichocarpa miR482d stem-loop
Gene family MIPF0000403; MIR482
Literature search

7 open access papers mention ptc-MIR482d
(123 sentences)

Stem-loop 
          ----a     a     u     ac         uc   a       -u    u          -aaga  uu     ucuc 
5' agagaag     gggga agaga ggagg  gaggaaguu  ugg caugggu  gguu gcaagaaaau     uu  ugaac    u
   |||||||     ||||| ||||| |||||  |||||||||  ||| |||||||  |||| ||||||||||     ||  |||||    g
3' ucucuuc     ucccu ucucu ccuuc  cuccuuuag  acc guaccca  ccag cguucuuuug     ag  acuug    a
          cuuug     c     -     ga         ua   -       cc    c          acaaa  gu     uuau
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000346.2: 12814668-12814838 [-]
intergenic
Database links

Mature sequence ptc-miR482d-5p

Accession MIMAT0025234
Sequence

40 -  

ggacauggguugguuugcaaga

 - 61

Get sequence
Evidence experimental; miRNAseq [1], Illumina [2]

Mature sequence ptc-miR482d-3p

Accession MIMAT0025235
Sequence

110 -  

uugccgaccccacccaugccaa

 - 131

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).
2
PMID:23570526 "Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis" Shuai P, Liang D, Zhang Z, Yin W, Xia X BMC Genomics. 14:233(2013).