miRBase entry: ptc-MIR6438a

Stem-loop ptc-MIR6438a


Accession
MI0022013
Description
Populus trichocarpa ptc-MIR6438a precursor miRNA
Gene family
MIPF0001538; MIR6438


Sequence

gagaguuguuugaucuguccugaaacaccaaucacgaaucuugcaagaauugagguaUUGUACACAGAAUAGGUGAAAUagcuuuc
(((((((((((.((((((.(((..(((...(((.(((.(((....))).))).)))..)))...))).)))))).)))))))))))

Structure
           g      c   -aa   cca   a   a   u 
gagaguuguuu aucugu cug   aca   auc cga ucu g
||||||||||| |||||| |||   |||   ||| ||| |||  
cuuucgaUAAA UGGAUA GAC   UGU   ugg guu aga c
           G      A   ACA   -Ua   a   a   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ptc-miR6438a

Accession MIMAT0025241
Description Populus trichocarpa ptc-miR6438a mature miRNA
Sequence 58 - UUGUACACAGAAUAGGUGAAAU - 79
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034