miRBase entry: ptc-MIR6447

Stem-loop ptc-MIR6447


Accession
MI0022022
Description
Populus trichocarpa ptc-MIR6447 precursor miRNA


Sequence

ggccggguuucaaaacuaugaggucaaauuuucuuauauucgucacuuuuugucaauucgauccaauuggacugaacaauguaguauccuugaagcacuuggucauacuuuguuuacaaauaagucuaauuagucugaaUUGACGAAAUGUGACGACUACaaggugauauugaugaaauuuuauucuuuggagcuuguuugcc
((((((((((((((...(((((((((((((.((((.((.(((((((.(((((((((((((..(.(((((((((((((((.(((....((..(.....)..))...))).)))))).......))))))))).)..))))))))))))).))))))).)).)))).))).))))).....)))))..)))))))))))...)))

Structure
   ---           acu     -----     -   u    a  u       u             au c         -------      u   guau  uu a 
ggc   cggguuucaaa   augag     gucaa auu ucuu ua ucgucac uuuugucaauucg  c aauuggacu       gaacaa gua    cc  g a
|||   |||||||||||   |||||     ||||| ||| |||| || ||||||| |||||||||||||  | |||||||||       |||||| |||    ||  | g
ccg   guucgagguuu   uauuu     uaguu uag ggaa AU AGCAGUG AAAGCAGUUaagu  g uuaaucuga       uuuguu cau    gg  c c
   uuu           -cu     uaaag     a   u    C  C       U             cu a         auaaaca      u   -acu  uu a 


Annotation confidence Not enough data
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Genome context
CM000350.2: 5281844-5282046 [-]

Database links

Mature ptc-miR6447

Accession MIMAT0025250
Description Populus trichocarpa ptc-miR6447 mature miRNA
Sequence 140 - UUGACGAAAUGUGACGACUAC - 160
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034