miRBase entry: ptc-MIR6423

Stem-loop ptc-MIR6423


Accession
MI0022024
Description
Populus trichocarpa ptc-MIR6423 precursor miRNA


Sequence

uccuuaaagcccucgccuucuccggcaccgCCGCUGUCGCCACUAUCUUCCUccgcuucacuccggucaucgacagcggcgguggagacugguucgggggaggcaguugguuaggcggcggcggcgguggcggcggcggcggagacggagga
(((((....(.(.((((.((.(((.((((((((((((((((((((.((.(((((.((.....((((((.((.((.......)).))))))))...)).))))).)).))))..)))))))))))))))).))).)).))))).)...)))))

Structure
     aaag c u    u  u   g                --    U  U     g  ucacu      a  g  ag 
uccuu    c c cgcc uc ccg caccgCCGCUGUCGCC  ACUA CU CCUcc cu     ccgguc uc ac  c
|||||    | | |||| || ||| ||||||||||||||||  |||| || ||||| ||     |||||| || ||  g
aggag    g g gcgg gg ggc guggcggcggcggcgg  uggu ga ggagg gg     ggucag ag ug  g
     -gca a -    c  c   g                au    u  c     g  --cuu      -  g  gc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000337.2: 9702156-9702307 [+]

Database links

Mature ptc-miR6423

Accession MIMAT0025252
Description Populus trichocarpa ptc-miR6423 mature miRNA
Sequence 31 - CCGCUGUCGCCACUAUCUUCCU - 52
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034