miRBase entry: ptc-MIR6449

Stem-loop ptc-MIR6449


Accession
MI0022025
Description
Populus trichocarpa ptc-MIR6449 precursor miRNA


Sequence

aaaaccguuauucagaauaaugguuuugauuuaaaccaugauucagaauagcgguuguguuaaaacCAUGAUUCUGAAUAACGGUUUu
((((((((((((((((((.(((((((((((...((((...............))))..))))))))))).))))))))))))))))))

Structure
                  a           uua    augauu 
aaaaccguuauucagaau augguuuugau   aacc      c
|||||||||||||||||| |||||||||||   ||||      a
uUUUGGCAAUAAGUCUUA UACcaaaauug   uugg      g
                  G           -ug    cgauaa 


Annotation confidence Not enough data
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Genome context
CM000351.2: 678064-678151 [+]

Database links

Mature ptc-miR6449

Accession MIMAT0025253
Description Populus trichocarpa ptc-miR6449 mature miRNA
Sequence 67 - CAUGAUUCUGAAUAACGGUUU - 87
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034