miRBase entry: ptc-MIR6445b

Stem-loop ptc-MIR6445b


Accession
MI0022028
Description
Populus trichocarpa ptc-MIR6445b precursor miRNA
Gene family
MIPF0001621; MIR6445


Sequence

ggcugcuucuuuuucucucugggcacguugUUCAUUCCUCUUCCUAAAAUGGcuucuucuccuuuaguuguugcaauuauaggagaggagaauccauuuuaggaagggaaugaauacugugucgguuuuacgagggagacaauc
...........(((((((((.((((((.((((((((((.(((((((((((((.((((((((((.((((((...)))))).))))))))))...))))))))))))))))))))))).)))))).)......)))))))).....

Structure
ggcugcuucuu        ------ g      u          U             --c          u      u 
           uuucucuc      u ggcacg ugUUCAUUCC CUUCCUAAAAUGG   uucuucuccu uaguug  
           ||||||||      | |||||| |||||||||| |||||||||||||   |||||||||| |||||| u
           agagggag      g cugugu auaaguaagg gaaggauuuuacc   gaggagagga auuaac  
------cuaac        cauuuu g      c          -             uaa          u      g 


Annotation confidence Not enough data
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Genome context
CM000351.2: 8556696-8556839 [+]

Database links

Mature ptc-miR6445b

Accession MIMAT0025256
Description Populus trichocarpa ptc-miR6445b mature miRNA
Sequence 31 - UUCAUUCCUCUUCCUAAAAUGG - 52
Evidence experimental
miRNAseq [1], Illumina [2]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034

  2. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233