Stem-loop sequence ptc-MIR169ag

Accession

MI0022041 (change log)

Description

Populus trichocarpa miR169ag stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

9 open access papers mention ptc-MIR169ag
(12 sentences)

Stem-loop

   u ag        --   c  a        -uc    c  ugu u       a   g      g    --agcauuu       g    u 
5'  g  agaagaga  ggu ua uaugagga   agag cu   g ggaagcc agg ugacuu ccug         caggaag uuuc a
    |  ||||||||  ||| || ||||||||   |||| ||   | ||||||| ||| |||||| ||||         ||||||| |||| u
3'  c  ucuucucu  ccg au guacucuu   ucuc ga   c cuuucgg ucc acugaa ggac         guuuuuc aaag a
   a cu        uu   u  c        ucu    u  ugu -       c   a      -    guuuugauu       g    u 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000345.2: 12179585-12179758 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0022041

Mature sequence ptc-miR169ag

• Accession: MIMAT0025269
• Sequence: 44 - aagccaagggugacuugccuga - 65
• Evidence: experimental; miRNAseq [1]

References

1. PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).