miRBase entry: ptc-MIR2111b

Stem-loop ptc-MIR2111b


Accession
MI0022044
Description
Populus trichocarpa ptc-MIR2111b precursor miRNA
Gene family
MIPF0000754; MIR2111


Sequence

auauugggucaggauugggUAAUCUGCAUCCUGAGGUUUGgaucaccacauguuuugaucuaguccuuggguugcagauuaccucuuccucacugacaaugu
(((((((((.((((..((((((((((((.(((((((.((((((((..........)))))))).))))))).))))))))))))..)))).)))..))))))

Structure
      --   c    uu            U       U        ccac 
auauug  ggu agga  gggUAAUCUGCA CCUGAGG UUGgauca    a
||||||  ||| ||||  |||||||||||| ||||||| ||||||||     
uguaac  uca uccu  uccauuagacgu ggguucc gaucuagu    u
      ag   c    uc            u       u        uuug 


Annotation confidence Not enough data
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Genome context
CM000342.2: 6828097-6828198 [-]

Database links

Mature ptc-miR2111b

Accession MIMAT0025272
Description Populus trichocarpa ptc-miR2111b mature miRNA
Sequence 20 - UAAUCUGCAUCCUGAGGUUUG - 40
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034