Stem-loop sequence ptc-MIR477d

AccessionMI0022047 (change log)
DescriptionPopulus trichocarpa miR477d stem-loop
Gene family MIPF0000216; MIR477
Literature search

1 open access papers mention ptc-MIR477d
(1 sentences)

Stem-loop 
         ---cuac    au    -     uc g       u      cu   u   uaau    uua 
5' augcua       augg  ggag aagcu  c aucuccc caaagg  ucc cua    ugcc   c
   ||||||       ||||  |||| |||||  | ||||||| ||||||  ||| |||    ||||   a
3' uacggu       uacc  ccuc uucga  g uagaggg guuucc  agg gau    acgg   u
         aacucaa    --    a     ga g       -      uc   u   ---u    uag
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000351.2: 12480540-12480666 [+]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR477d
ptc-MIR477dCM000351.2: 12480540-12480666 [+]
ptc-MIR1446eCM000351.2: 12482366-12482472 [+]
Database links

Mature sequence ptc-miR477d-5p

Accession MIMAT0025275
Sequence

30 -  

aucucccucaaaggcuuccucu

 - 51

Get sequence
Evidence experimental; miRNAseq [1], Illumina [2]

Mature sequence ptc-miR477d-3p

Accession MIMAT0025276
Sequence

78 -  

uggacuccuuuggggagaugg

 - 98

Get sequence
Evidence experimental; miRNAseq [1], Illumina [2]

References

1
PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).
2
PMID:23570526 "Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis" Shuai P, Liang D, Zhang Z, Yin W, Xia X BMC Genomics. 14:233(2013).