Stem-loop mja-mir-6492

Accession

MI0022069

Description

Marsupenaeus japonicus mja-mir-6492 precursor miRNA

Sequence

aguagcaaaugcucgagcaagccgaacccucGUUGACCGAAGCGGAGGAGgguuccccgccaacaucgcuuggucguggauaagucggcccuuagcccgaggauagcuucc
...(((..((.((((.((..(((((....((..(((((.((((((.((.(((...))).))....)))))))))))..))....))))).....)).)))).)).)))...

Structure

agu   aa  g    a  ---aa     accc  GU     G      ---A  A   u 
   agc  au cucg gc     gccga    uc  UGACC AAGCGG    GG Ggg  
   |||  || |||| ||     |||||    ||  ||||| ||||||    || ||| u
   ucg  ua gagc cg     cggcu    ag  gcugg uucgcu    cc ccc  
ccu   -a  g    c  auucc     gaau  gu     -      acaa  g   c 

Annotation confidence Not enough data

Genome context

Unknown

Mature mja-miR-6492

• Accession: MIMAT0025300
• Description: Marsupenaeus japonicus mja-miR-6492 mature miRNA
• Sequence: 32 - GUUGACCGAAGCGGAGGAG - 50
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22545795
   Characterization of host microRNAs that respond to DNA virus infection in a crustacean
   Huang T, Xu D, Zhang X
   BMC Genomics (2012) 13:159