miRBase entry: ssc-let-7d

Stem-loop ssc-let-7d


Accession
MI0022120
Description
Sus scrofa ssc-let-7d precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
41 open access papers mention ssc-let-7d
(124 sentences)

Sequence

90 reads, 99 reads per million, 13 experiments
guuccuaggaAGAGGUAGUAGGUUGCAUAGUUuuagggcagagauuuugcccacaaggagguaaCUAUACGACCUGCUGCCUUUCUuagggccuua
..((((((((.((((((((((((((.((((((...(((((((...)))))))..........)))))).)))))))))))))))))))))).....

Structure
---gu        A              C      -------uua       g 
     uccuagga GAGGUAGUAGGUUG AUAGUU          gggcaga  
     |||||||| |||||||||||||| ||||||          ||||||| a
     gggauUCU UUCCGUCGUCCAGC UAUCaa          cccguuu  
auucc        -              A      uggaggaaca       u 


Annotation confidence Not enough data
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Genome context
chr3: 44867267-44867362 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ssc-let-7d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-let-7d-5p

Accession MIMAT0025356
Description Sus scrofa ssc-let-7d-5p mature miRNA
Sequence 11 - AGAGGUAGUAGGUUGCAUAGUU - 32
Evidence experimental
Illumina [1-2]

Mature ssc-let-7d-3p

Accession MIMAT0025357
Description Sus scrofa ssc-let-7d-3p mature miRNA
Sequence 65 - CUAUACGACCUGCUGCCUUUCU - 86
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100