miRBase entry: ssc-let-7f-2

Stem-loop ssc-let-7f-2


Accession
MI0022121
Description
Sus scrofa ssc-let-7f-2 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
46 open access papers mention ssc-let-7f-2
(239 sentences)

Sequence

3991 reads, 1058 reads per million, 14 experiments
ucuaucagagUGAGGUAGUAGAUUGUAUAGUUgugggguagugauuuuacccuguucaggagauaaCUAUACAAUCUAUUGCCUUCCcugaggagua
(((.((((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).))))))))...

Structure
---   a    a U                       ---------       u 
   ucu ucag g GAGGUAGUAGAUUGUAUAGUUgu         gggguag g
   ||| |||| | |||||||||||||||||||||||         ||||||| a
   agg aguc C UUCCGUUAUCUAACAUAUCaaua         ucccauu u
aug   -    - C                       gaggacuug       u 


Annotation confidence Not enough data
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Genome context
chr3: 44864800-44864896 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ssc-let-7f-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-let-7f-5p

Accession MIMAT0002152
Description Sus scrofa ssc-let-7f-5p mature miRNA
Sequence 11 - UGAGGUAGUAGAUUGUAUAGUU - 32
Evidence experimental
Illumina [1-2]

Mature ssc-let-7f-3p

Accession MIMAT0037464
Description Sus scrofa ssc-let-7f-3p mature miRNA
Sequence 67 - CUAUACAAUCUAUUGCCUUCC - 87
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100

  3. PubMed ID: 25230983
    The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
    "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
    "J Appl Genet (2015) 56:239-252