Stem-loop sequence ssc-mir-7-1

Accession

MI0022122 (change log)

Description

Sus scrofa miR-7-1 stem-loop

Gene family

MIPF0000022; mir-7

Literature search

12 open access papers mention ssc-mir-7-1
(22 sentences)

Stem-loop

   ca   ----    c   a     a u     u       ucuca 
5'   gcc    ccau ugg agacu g gauuu guuguug     c
     |||    |||| ||| ||||| | ||||| |||||||      
3'   cgg    ggua gcc ucuga c cugaa caacaac     u
   ac   ccgu    c   g     c -     -       ucgcg 

Deep sequencing

1919 reads, 260 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr1: 212651386-212651469 [-]
• Overlapping transcripts:

  sense

  ENSSSCT00000021406 ; ssc-mir-7-1.1-201; exon 1

Database links

• miRBase Tracker:MI0022122

Mature sequence ssc-miR-7-5p

• Accession: MIMAT0002141
• Sequence: 11 - uggaagacuagugauuuuguuguu - 34
• Deep sequencing: 4545 reads, 15 experiments
• Evidence: experimental; Illumina [1-2]

References

1. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
2. PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).