miRBase entry: ssc-mir-7-1

Stem-loop ssc-mir-7-1


Accession
MI0022122
Description
Sus scrofa ssc-mir-7-1 precursor miRNA
Gene family
MIPF0000022; mir-7

Literature search
12 open access papers mention ssc-mir-7-1
(22 sentences)

Sequence

174 reads, 107 reads per million, 13 experiments
cagccccaucUGGAAGACUAGUGAUUUUGUUGUUgucucacugcgcucaacaacaagucccagucugccgcauggugccggcca
..(((((((.(((.(((((.(.(((((.(((((((............))))))))))))).))))).))).))))....)))..

Structure
ca   ----    c   A     A U     U       ucuca 
  gcc    ccau UGG AGACU G GAUUU GUUGUUg     c
  |||    |||| ||| ||||| | ||||| |||||||      
  cgg    ggua gcc ucuga c cugaa caacaac     u
ac   ccgu    c   g     c -     -       ucgcg 


Annotation confidence Not enough data
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Genome context
chr1: 212651386-212651469 [-]

Database links

Mature ssc-miR-7-5p

Accession MIMAT0002141
Description Sus scrofa ssc-miR-7-5p mature miRNA
Sequence 11 - UGGAAGACUAGUGAUUUUGUUGUU - 34
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100