miRBase entry: ssc-mir-29b-2

Stem-loop ssc-mir-29b-2


Accession
MI0022126
Description
Sus scrofa ssc-mir-29b-2 precursor miRNA
Gene family
MIPF0000009; mir-29

Literature search
28 open access papers mention ssc-mir-29b-2
(68 sentences)

Sequence

34 reads, 60 reads per million, 7 experiments
cuucuggaagcugguuucacaugguggcuuagauuuuuccaucuuuguaucUAGCACCAUUUGAAAUCAGUGUUuuaggaguaa
(((((((((((((((((((.((((((.((.((((..............)))))))))))).)))))))))).)))))))))...

Structure
---         -          c      g  u    uuuucc 
   cuucuggaa gcugguuuca auggug cu agau      a
   ||||||||| |||||||||| |||||| || ||||       
   gaggauuUU UGACUAAAGU UACCAC GA Ucua      u
aau         G          U      -  -    uguuuc 


Annotation confidence Not enough data
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Genome context
chr9: 148552438-148552521 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-29b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-29b

Accession MIMAT0002137
Description Sus scrofa ssc-miR-29b mature miRNA
Sequence 52 - UAGCACCAUUUGAAAUCAGUGUU - 74
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100