Stem-loop sequence ssc-mir-31

Accession

MI0022127 (change log)

Description

Sus scrofa miR-31 stem-loop

Gene family

MIPF0000064; mir-31

Literature search

10 open access papers mention ssc-mir-31
(32 sentences)

Stem-loop

   -  u      ga     g   c         -u   aaa 
5'  ac ggagag  ggcaa aug uggcauagc  guu   c
    || ||||||  ||||| ||| |||||||||  |||    
3'  ug ucuuuc  ccguu uac accguaucg  caa   u
   c  u      ua     a   a         uc   gag 

Deep sequencing

460 reads, 41.7 reads per million, 12 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr1: 224397161-224397238 [+]
• Overlapping transcripts:

  antisense

  ENSSSCT00000019770 ; ssc-mir-31.1-201; exon 1

Database links

• miRBase Tracker:MI0022127

Mature sequence ssc-miR-31

• Accession: MIMAT0025360
• Sequence: 11 - aggcaagaugcuggcauagcug - 32
• Deep sequencing: 434 reads, 12 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).