miRBase entry: ssc-mir-31

Stem-loop ssc-mir-31


Accession
MI0022127
Description
Sus scrofa ssc-mir-31 precursor miRNA
Gene family
MIPF0000064; mir-31

Literature search
10 open access papers mention ssc-mir-31
(32 sentences)

Sequence

31 reads, 58 reads per million, 6 experiments
acuggagaggAGGCAAGAUGCUGGCAUAGCUGuuaaacugagaaccugcuaugccaacauauugccaucuuucuuguc
((.(((((((.(((((.(((.(((((((((.(((........)))..))))))))).))).))))).))))))).)).

Structure
-  u       A     G   C         -U   aaa 
 ac ggagagg GGCAA AUG UGGCAUAGC  Guu   c
 || ||||||| ||||| ||| |||||||||  |||    
 ug ucuuucu ccguu uac accguaucg  caa   u
c  u       a     a   a         uc   gag 


Annotation confidence Not enough data
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Genome context
chr1: 224397161-224397238 [+]

Database links

Mature ssc-miR-31

Accession MIMAT0025360
Description Sus scrofa ssc-miR-31 mature miRNA
Sequence 11 - AGGCAAGAUGCUGGCAUAGCUG - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328