miRBase entry: ssc-mir-182

Stem-loop ssc-mir-182


Accession
MI0022135
Description
Sus scrofa ssc-mir-182 precursor miRNA
Gene family
MIPF0000116; mir-182

Literature search
9 open access papers mention ssc-mir-182
(18 sentences)

Sequence

194 reads, 176 reads per million, 11 experiments
ucgcaccguuUUUGGCAAUGGUAGAACUCACACUggugagauaaugggauccggugguucuagacuugccaacuauggugcgag
(((((((((..(((((((...((((((...((((((..............))))))))))))...)))))))..))))))))).

Structure
-         uU       UGG      UCA      ugagau 
 ucgcaccgu  UUGGCAA   UAGAAC   CACUgg      a
 |||||||||  |||||||   ||||||   ||||||       
 agcguggua  aaccguu   aucuug   guggcc      a
g         uc       cag      ---      uagggu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr18: 20035212-20035295 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ssc-mir-182
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-182

Accession MIMAT0025366
Description Sus scrofa ssc-miR-182 mature miRNA
Sequence 11 - UUUGGCAAUGGUAGAACUCACACU - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328