miRBase entry: ssc-mir-194a

Stem-loop ssc-mir-194a


Accession
MI0022137
Description
Sus scrofa ssc-mir-194a precursor miRNA
Gene family
MIPF0000055; mir-194

Literature search
11 open access papers mention ssc-mir-194a
(31 sentences)

Sequence

4 reads, 11 reads per million, 3 experiments
ugccacccccUGUAACAGCAACUCCAUGUGGaagugcccacuaguuCCAGUGGGGCUGCUGUUAUCUggggugggg
..(((((((..(((((((((.((((((.(((((.((.....)).))))))))))).)))))))))..)))))))..

Structure
ug       cU         A      G     g  c 
  ccacccc  GUAACAGCA CUCCAU UGGaa ug c
  |||||||  ||||||||| |||||| ||||| || c
  ggugggg  UAUUGUCGU GGGGUG ACCuu au a
gg       UC         C      -     g  c 


Annotation confidence Not enough data
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Genome context
chr2: 6416779-6416854 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-194a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-194a-5p

Accession MIMAT0025368
Description Sus scrofa ssc-miR-194a-5p mature miRNA
Sequence 11 - UGUAACAGCAACUCCAUGUGG - 31
Evidence experimental
Illumina [1]

Mature ssc-miR-194a-3p

Accession MIMAT0037465
Description Sus scrofa ssc-miR-194a-3p mature miRNA
Sequence 47 - CCAGUGGGGCUGCUGUUAUCU - 67
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  2. PubMed ID: 25230983
    The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
    "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
    "J Appl Genet (2015) 56:239-252