miRBase entry: ssc-mir-196a-1

Stem-loop ssc-mir-196a-1


Accession
MI0022138
Description
Sus scrofa ssc-mir-196a-1 precursor miRNA
Gene family
MIPF0000031; mir-196

Literature search
16 open access papers mention ssc-mir-196a-1
(105 sentences)

Sequence

cugagugaauUAGGUAGUUUCAUGUUGUUGGGccuggauuucugaacacaacgacauuaaaccacccgacucacggcagu
(((.((((.((.(((.((((.((((((((((..(.........)..).))))))))).)))).))).)).))))..))).

Structure
-   -a    a  A   A    C         - Gc ugg 
 cug  guga uU GGU GUUU AUGUUGUUG G  c   a
 |||  |||| || ||| |||| ||||||||| |  |   u
 gac  cacu ag cca caaa uacagcaac c  g   u
u   gg    c  c   c    u         a aa ucu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr12: 24836774-24836853 [+]

Database links

Mature ssc-miR-196a

Accession MIMAT0002163
Description Sus scrofa ssc-miR-196a mature miRNA
Sequence 11 - UAGGUAGUUUCAUGUUGUUGGG - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328