miRBase entry: ssc-mir-212

Stem-loop ssc-mir-212


Accession
MI0022140
Description
Sus scrofa ssc-mir-212 precursor miRNA
Gene family
MIPF0000065; mir-132

Literature search
3 open access papers mention ssc-mir-212
(8 sentences)

Sequence

7 reads, 12 reads per million, 3 experiments
gcgcgccggcACCUUGGCUCUAGACUGCUUACUgcccgggccgcccucaguaacagucuccagucacggccaccgacgccug
..(((.(((..((.(((((..((((((.((((((...(((...))).))))))))))))..))))).))...))).)))...

Structure
-gc   c   -cA  U     CU      C      ccc   c 
   gcg cgg   CC UGGCU  AGACUG UUACUg   ggg  
   ||| |||   || |||||  |||||| ||||||   ||| c
   cgc gcc   gg acuga  ucugac aaugac   ccc  
guc   a   acc  c     cc      -      --u   g 


Annotation confidence Not enough data
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Genome context
chr12: 50016151-50016232 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-212
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-212

Accession MIMAT0025370
Description Sus scrofa ssc-miR-212 mature miRNA
Sequence 11 - ACCUUGGCUCUAGACUGCUUACU - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328