Stem-loop sequence ssc-mir-218-2

Accession

MI0022143 (change log)

Description

Sus scrofa miR-218-2 stem-loop

Gene family

MIPF0000026; mir-218

Literature search

6 open access papers mention ssc-mir-218-2
(33 sentences)

Stem-loop

   a   u      u         cu        gg    -  g 
5'  gau uucugu gugcuugau  aaccaugu  uugc ca g
    ||| |||||| |||||||||  ||||||||  |||| ||  
3'  cug aaggua cacgaacug  uugguaca  aaug gu u
   a   c      c         uc        -a    a  a 

Deep sequencing

581 reads, 41.7 reads per million, 12 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chrUScaf1267: 26754-26835 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0022143

Mature sequence ssc-miR-218

• Accession: MIMAT0025371
• Sequence: 11 - uugugcuugaucuaaccaugu - 31
• Deep sequencing: 581 reads, 12 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).